Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNTEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKETGAEEKYKEVQEAYETLSDTQKRAAYDQYGAAGANGGFGGFDGGGFGGFDGGGFGGFEDIFSSFFGGGGMRNPNAPRQGDDLQYRVNLSFEEAIFGAEKEVSYNRESSCHTCSGSGAKPGTSPVTCQKCHGSGVINVDTQTPLGTMRRQVTCDVCQGSGQEIKEKCPTCHGTGHEKKTHKVSVKIPAGVETGQQIRLTGQGEAGFNGGPYGDLFVIINVLPSQQFERNGSTIYYTLKISFVQAALGDTIDIPTVHGAVEMSIPAGTQTGKTFRLRGKGAPKLRGGGQGDQHVTVNIVTPTKLNDAQKEALHAFAEASGDKMVHPKKKGFFDKVKDALDVD |
3LZ8 Chain:A ((113-294)) | ------------------------------------------------------------------------------------------------------------------AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--VF---------------------------------------------------------G-IESETPKTLNVKIPAGVVDGQRIRLKGQGTPG---GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKT--HTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKTW-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47340 for 1120 contacts (-42.3/contact) +
2D Compatibility (PS) -19358 + (NN) -8170 + (LL) 4640
1D Compatibility (HY) -12800 + (ID) 3000
Total energy: -86028.0 ( -76.81 by residue)
QMean score : 0.521
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