Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNRKDDHIKYALKYQS----PYNSFDDIELIHSSLPKYNVNDIDLSTHFAGQSFEFPFYINAMTGGSEKGKAVNHKLAQVAQATGIVMATGSYSAALKNDEDD---SYPTT-DLYPDLKLATNIGLDKPL--PAAESTVKA---MNPIFLQVHVNVMQELLMPEGEREFHMWRSHLKEYVDN---IQCPLILKEVGFGMDLQSIKDAYDIGITTVDISGRGGTSFAYIENQRGRD-R-------SYLNTWGQTTAQSLINAQSMMDKMDILASGGIRHPLDMVKCLVLGAKAVGLSRTVLELVERYPVDDVIAILNSWKEDLRMIMCALNCKKITDLRQVNYILYGQLKEANAK |
| 3VKJ Chain:A ((4-350)) | IVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQR--VAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQ--IYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIE-GKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGKLKEWAEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176670 for 2909 contacts (-60.7/contact) +
2D Compatibility (PS) -34604 + (NN) -10355 + (LL) 744
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -243335.0 ( -83.65 by residue)
QMean score : 0.503
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