Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVK--QEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQDLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
1VPA Chain:A ((13-231))-MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHE--KV-LGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVEND-RIEYIPRKGVYRILTPQAFSYEILKKAHEN----GGEWADDTEPVQKLG-VKIALVEGDPLCFKVTFKEDLELARIIAREWE-----


General information:
TITO was launched using:
RESULT:

Template: 1VPA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110947 for 1801 contacts (-61.6/contact) +
2D Compatibility (PS) -23866 + (NN) -11492 + (LL) 580
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -162725.0 ( -90.35 by residue)
QMean score : 0.517

(partial model without unconserved sides chains):
PDB file : Tito_1VPA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VPA-query.scw
PDB file : Tito_Scwrl_1VPA.pdb: