Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MRPYEIMVILDPTLDERTVAPSLETFLNVVRKD-GGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH---------
1VMB Chain:A ((17-123))
KERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFYRVTPEIIRWQTFRRFDLEKKERKAQR
General information:
TITO was launched using:
RESULT:
Template:
1VMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58780 for 653 contacts (-90.0/contact) +
2D Compatibility (PS) -10100 + (NN) -859 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 1400
Total energy: -78739.0 ( -120.58 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1VMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VMB-query.scw
PDB file :
Tito_Scwrl_1VMB.pdb
: