Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRHWPLFDLRITTPRLQLQLPTEELCDQLIDTILEGVHDPDRMPFSVPWTRASREDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVDSGSW-LGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDR--VAREGAMAEALLFRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEPPRY
4RI1 Chain:A ((8-185))
-KKNYSYKNIQAID--------FTNLNDGEKLLVLEFRNHPNTALWMYS---------TFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITK----INFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSLLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
4RI1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80640 for 1269 contacts (-63.5/contact) +
2D Compatibility (PS) -18397 + (NN) -2806 + (LL) 2100
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -107893.0 ( -85.02 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_4RI1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RI1-query.scw
PDB file :
Tito_Scwrl_4RI1.pdb
: