Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGR-RAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTST-KDLADAFAFNV-GTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAAR-GFAAYGTAKAALAHYTRLAALDLCP-RVRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
3PK0 Chain:D ((5-255))
----MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAG-VFPDAPLATMTPEQLNGIFAVNVNGTFYA--VQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGL--LENGEEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVLPE--------
General information:
TITO was launched using:
RESULT:
Template:
3PK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151525 for 2159 contacts (-70.2/contact) +
2D Compatibility (PS) -27152 + (NN) -12330 + (LL) 1164
1D Compatibility (HY) -16000 + (ID) 4800
Total energy: -210643.0 ( -97.57 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_3PK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PK0-query.scw
PDB file :
Tito_Scwrl_3PK0.pdb
: