Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAA-VGDYPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1CDE Chain:A ((2-185))
-------------NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFA--------------------
General information:
TITO was launched using:
RESULT:
Template:
1CDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139725 for 1454 contacts (-96.1/contact) +
2D Compatibility (PS) -20966 + (NN) -15128 + (LL) 1804
1D Compatibility (HY) -10400 + (ID) 3350
Total energy: -187765.0 ( -129.14 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_1CDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CDE-query.scw
PDB file :
Tito_Scwrl_1CDE.pdb
: