Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDKLGGVAIAVQGALFEHNERRQLGDGAFIDIRSGWLTG-GEELLDALLSTV---PWRAERRQMYDRVVDVP--RL----------VSFHDLT----IEDP--PHPQLARMRRRLNDIYGGELGEPFTTAGLCYYRDGSDSVAWHGDTIG-RGSTEDTMVAIVSLGATRVFALRPRGR-GPSLRLPLAHGDLLVMGGSCQRTFEHAVPKTSA-----PTGPRVSIQFRPRDVR
4JHT Chain:A ((6-204))
---------------------------AAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTP-GGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG-YPDFQPDACLINRYAPG-AKLSLHQDKDEPD-L--RAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRYNLTFRQAGK-
General information:
TITO was launched using:
RESULT:
Template:
4JHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85684 for 1256 contacts (-68.2/contact) +
2D Compatibility (PS) -18529 + (NN) -8778 + (LL) 1924
1D Compatibility (HY) -4000 + (ID) 1750
Total energy: -116817.0 ( -93.01 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4JHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JHT-query.scw
PDB file :
Tito_Scwrl_4JHT.pdb
: