Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKPNNQTTVVITGASSGIGVELARGLAGRGFPLMLVARRRERLDELADQLRQEHCVGVEVLPLDLADTQARAQLADRL-----RSDAIAGLCNSAGFGTSGRFWELPFARESEEVVLNALALMELTHAALP--GMVKRGAGAVLNIASIAGFQPIPYMAVYSATKAFVLTFSEAVQEELHGTGVSVTALCPGPVPTEWA-----------EIASAERFS-----IPLAQ-VSPHDVAEAAIAGMLSGKRTVVPGIVPKFVSTSGRFAPRSLLLPAIRIGNRLRGGPSR
2RH4 Chain:B ((20-250))
------QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEA-DGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAE--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120759 for 1667 contacts (-72.4/contact) +
2D Compatibility (PS) -23013 + (NN) -14825 + (LL) 2984
1D Compatibility (HY) -12000 + (ID) 3700
Total energy: -171313.0 ( -102.77 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2RH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RH4-query.scw
PDB file :
Tito_Scwrl_2RH4.pdb
: