Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQL-GVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
1U2P Chain:A ((4-159))
---PLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQLGVE-AARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLAR----
General information:
TITO was launched using:
RESULT:
Template:
1U2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115187 for 1327 contacts (-86.8/contact) +
2D Compatibility (PS) -16950 + (NN) -9391 + (LL) -212
1D Compatibility (HY) -18400 + (ID) 7650
Total energy: -167790.0 ( -126.44 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1U2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U2P-query.scw
PDB file :
Tito_Scwrl_1U2P.pdb
: