Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVISDHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIAR---HKFLDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP
4WK6 Chain:D ((10-245))
---------------LEGKVALVTGAS-RGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKG----MALNVTNPESIEAVLKAITDEFGGVDILVNNAGIT---LLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVAS---------QANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPA----GRLGDPREIASAVAFLASPEAAYITGETLHVN----
General information:
TITO was launched using:
RESULT:
Template:
4WK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127536 for 1818 contacts (-70.2/contact) +
2D Compatibility (PS) -24082 + (NN) -5453 + (LL) 1980
1D Compatibility (HY) -13200 + (ID) 4200
Total energy: -172491.0 ( -94.88 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_4WK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WK6-query.scw
PDB file :
Tito_Scwrl_4WK6.pdb
: