Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQD-LLLITVLKGAVLFVTDLARAIP---VPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
1TC2 Chain:B ((9-190))
-------------------------------------EKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPEVY-
General information:
TITO was launched using:
RESULT:
Template:
1TC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167175 for 1386 contacts (-120.6/contact) +
2D Compatibility (PS) -19546 + (NN) -6831 + (LL) 2372
1D Compatibility (HY) -20400 + (ID) 4050
Total energy: -215630.0 ( -155.58 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_1TC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC2-query.scw
PDB file :
Tito_Scwrl_1TC2.pdb
: