Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDL---SEDKSE-------PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
3U04 Chain:A ((3-186))
MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEE----IEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKERT--
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77112 for 1276 contacts (-60.4/contact) +
2D Compatibility (PS) -17310 + (NN) -6210 + (LL) 304
1D Compatibility (HY) -19200 + (ID) 3850
Total energy: -123378.0 ( -96.69 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: