Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MTAIYLAGPDV--FRPDAEAHG-ETLKALCAEFGFVGLYPLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALG-KPVYAYLSDAGAYAERLARLAPE------WLGEHPGEDRDGWQLEGF-GLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
1DMG Chain:A ((1-225))
AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSDWSKKLNKKMKKLALRSALSVKYRENK-------LLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLT---RDMVSKIEEVLG---
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80517 for 1159 contacts (-69.5/contact) +
2D Compatibility (PS) -17751 + (NN) -12097 + (LL) 132
1D Compatibility (HY) -9200 + (ID) 1200
Total energy: -120633.0 ( -104.08 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: