Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
2JJY Chain:D ((2-257))
-GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-QFKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIK------------MLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHCVSMGNVL--
General information:
TITO was launched using:
RESULT:
Template:
2JJY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175715 for 2062 contacts (-85.2/contact) +
2D Compatibility (PS) -26832 + (NN) -11848 + (LL) 820
1D Compatibility (HY) -25600 + (ID) 7400
Total energy: -246575.0 ( -119.58 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2JJY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JJY-query.scw
PDB file :
Tito_Scwrl_2JJY.pdb
: