Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRH---PRIRREELDITDSQRLQRLFEALPR----LDVLVNNAGISRD------REEYDLATFERVLRLNLSAAM-LASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
4WK6 Chain:C ((12-247))
---------GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEE----EWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVASVVG------QANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN-DEQRTATLAQ-VPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG----
General information:
TITO was launched using:
RESULT:
Template:
4WK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137952 for 1766 contacts (-78.1/contact) +
2D Compatibility (PS) -23783 + (NN) -12703 + (LL) 2160
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -192328.0 ( -108.91 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4WK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WK6-query.scw
PDB file :
Tito_Scwrl_4WK6.pdb
: