Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQEVRFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWA-DFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAHRRFRRAMEAC
2GFN Chain:A ((4-178))
--------IVDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAEG----TARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108695 for 1224 contacts (-88.8/contact) +
2D Compatibility (PS) -19101 + (NN) -16808 + (LL) 3548
1D Compatibility (HY) -5600 + (ID) 1850
Total energy: -148506.0 ( -121.33 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2GFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFN-query.scw
PDB file :
Tito_Scwrl_2GFN.pdb
: