Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTENFPPYNMAINGKNFAQEDNIDGIAVDIVREMFKRAGIKYSLTLRFPWDRIYKLALEKPGYGVFV-TARLAERED--KFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIGAYKGDAIAEFLGKNGFEADLAL-RDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTVL-RFNSDQLYLALNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL
1II5 Chain:A ((3-225))
-------------------------AMALKVGVVGNPPFVFYG---------AFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQ-ADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKEN--SPLQKTINVEMLNLLYSRVIAEFTERWL
General information:
TITO was launched using:
RESULT:
Template:
1II5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103600 for 1758 contacts (-58.9/contact) +
2D Compatibility (PS) -23331 + (NN) -12797 + (LL) 2480
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -145348.0 ( -82.68 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1II5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1II5-query.scw
PDB file :
Tito_Scwrl_1II5.pdb
: