Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTKIIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
1VQT Chain:A ((19-210))
-----------LDMEDPIRFIDENGSFEVVKVGHNLA-IHGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALSA-----TDKHVFVVVKLTSMEG-SL----------EDYMDRIEK-LNKLGCDFVLPGPW-AKALREKI--KGKILVPGIR----------DVVTLEEM-KGIANFAVLGREIYLSENPREKIKRIKE----
General information:
TITO was launched using:
RESULT:
Template:
1VQT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56923 for 1399 contacts (-40.7/contact) +
2D Compatibility (PS) -19442 + (NN) -5073 + (LL) 2932
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -92206.0 ( -65.91 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1VQT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQT-query.scw
PDB file :
Tito_Scwrl_1VQT.pdb
: