Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMIGFEKPFKLEEGNLFK-VYEQRKPTPENDDILVKVNSISVNPVDTKQRQMKVT-QAPRVLGFDAIGTVEAIGPDVTLFSPGDVVFYAGSP-------------------------------------------------NRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGL-TVITTASRQETTEWCEKMGADIVLNHKED---LVRQFKEKEIPLVDYIFCTYNTD-LYYNTMIELIKPL-GHITTIVAFNEDQDLNA-LKLKSITFTHEFMFARPIHRTPDMIKQHEYLEDITKNIELGHYQ--PTTTQVFEGLSPENLYQAHQLLEKQSMIGKLVINI |
| 1E3I Chain:A ((9-374)) | CKAAIAWKTGS-----PLCIEE-IEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVT------PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC-AGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSINGTFF---------GGWKSVDSVPNLVSDYKNKKFDLDLLVTHAL-PF--ESINDAIDLMKEGKSIRTIL--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1E3I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -189683 for 2805 contacts (-67.6/contact) +
2D Compatibility (PS) -32581 + (NN) -9161 + (LL) 1052
1D Compatibility (HY) -4000 + (ID) 3150
Total energy: -237523.0 ( -84.68 by residue)
QMean score : 0.519
|
|
|