Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDLSNINDFLEFSSDSE--TVFYMQRYK--A-NTTEEAQMVLANVC-M--KSPLGIYAMIETESNKMIGIIELEIRD---EFSAEFGYILNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
3IGR Chain:A ((3-184))
--------------VSFEFEHYQVRLIKSSDAVTIANYFMRNRHHLAPW-EPKRSHAFFTPEGWKQRLLQLVELHKHNLAFYFVVVDKNEHKIIGTVSYSNITRFPFHAGHVGYSLDSEYQGKGIMRRAVNVTIDWMFKAQNLHRIMAAYIPRNEKSAKVLAALGFVKEGEAKKY-LYINGAWEDHILTSKINDDWKP-----
General information:
TITO was launched using:
RESULT:
Template:
3IGR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75734 for 1228 contacts (-61.7/contact) +
2D Compatibility (PS) -17957 + (NN) -1699 + (LL) 2020
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -103170.0 ( -84.01 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3IGR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IGR-query.scw
PDB file :
Tito_Scwrl_3IGR.pdb
: