Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCKYKAIIFDMDGVLFDTELFYYKRRERFLKQHGITIDHLPMN-FFIGGNMKQVWKSVLGDQYDTWDIDKLQQDYSRYKEDNPLPYKDLIFQDCKRVIEKLHHKGYLLGLASSSTRHDIMLALESFNLDTYFK-VILSGEEFS--ESKPNPAIYNRAAELLDIPKQQILIVEDSEKGITAGIAAGIDVWAIEDK-YFGM------NQSQANVLVSDLSQFFVKLDNY
2FDR Chain:A ((3-221))
--GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIP-LSASLLDKSEKLLD-MRLERDVKIIDGVKFALSRLT---TPRCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAM
General information:
TITO was launched using:
RESULT:
Template:
2FDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99823 for 1750 contacts (-57.0/contact) +
2D Compatibility (PS) -22377 + (NN) -7218 + (LL) 280
1D Compatibility (HY) -12800 + (ID) 2500
Total energy: -144438.0 ( -82.54 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2FDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FDR-query.scw
PDB file :
Tito_Scwrl_2FDR.pdb
: