Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKIILGILSLLSVVTLVACGSSDKQLQDKVEKKGKLVLAVSPDYAPFEFKALVNGKDKVVGADIELAQAIADELHVKLEVSPM-SFDNVLSSLQ-TGKADMAISGLSYTKERAKVYDFSKPYYTTENAVLVRKSDLGKYTSIESLKGKKIAVQKGSIEEGVSKKSFKNSHVVSLTAMGEAISELK---SGKVEAVDLEKPVAEG----YLAQNPDLVL-------AKFALKTGEGDAKAVALPK-DSGKMLKTVNKVIKRLEKEDKYKVYISDAAKLTGNQVE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 4P0G Chain:A ((7-435)) | ------------------------APTALERVQKEGVLRVITRNSPATY-----FQDRNGETGFEYELAKRFAERLGVELKIETADNLDDLYAQLSREGGPALAAAGLTPGREDDASVRYSHTYLDV-TPQIIYRNGQQRPTRPEDLVGKRIMVLKGS------------SHAEQLAELKKQYPELKYEESDAVEVVDLLRMVDVGDIDLTLVDSNELAMNQVYFPNVRVAFDFGEARGLAWALPGGDDDSLMNEVNAFLDQAKKEGLLQRLKDRYY----GHVDVLGYVGAYTFAQHLQQRLPRYESHFKQSGKQLDTDWRLLAAIGYQESLWQPGATSKTGVRGLMMLTNRTAQAMGVSNRLDPKQSIQGGSKYFVQIRSELPESIKEPDRSWFALAAYNIGGAHLEDARKMAEKEGLNPNKWLDVKKMLPRLAQKQWYAKTRYGYARGGETVHFVQNVRRYYDILTWVTQPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P0G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72691 for 1747 contacts (-41.6/contact) +
2D Compatibility (PS) -23820 + (NN) -5028 + (LL) 3636
1D Compatibility (HY) -11600 + (ID) 3050
Total energy: -112553.0 ( -64.43 by residue)
QMean score : 0.463
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