Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAERGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQRLAGKLTRD
1O4V Chain:A ((14-175))
-------PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQI-GY----
General information:
TITO was launched using:
RESULT:
Template:
1O4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144242 for 1313 contacts (-109.9/contact) +
2D Compatibility (PS) -18588 + (NN) -11671 + (LL) 692
1D Compatibility (HY) -18400 + (ID) 4850
Total energy: -197059.0 ( -150.08 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1O4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4V-query.scw
PDB file :
Tito_Scwrl_1O4V.pdb
: