Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
3K9L Chain:C ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAG--------DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3K9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115883 for 1305 contacts (-88.8/contact) +
2D Compatibility (PS) -17761 + (NN) -7670 + (LL) 1332
1D Compatibility (HY) -22400 + (ID) 7850
Total energy: -170232.0 ( -130.45 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3K9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9L-query.scw
PDB file :
Tito_Scwrl_3K9L.pdb
: