Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
3FDM Chain:A ((32-147))
----------------------------------------------------------------------------------MAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNN-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81799 for 768 contacts (-106.5/contact) +
2D Compatibility (PS) -12402 + (NN) -2187 + (LL) 6376
1D Compatibility (HY) -17600 + (ID) 5800
Total energy: -113412.0 ( -147.67 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3FDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FDM-query.scw
PDB file :
Tito_Scwrl_3FDM.pdb
: