Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------MNGMNHSV--------VSEFVFMGLTNSREIQLLLFVFSLLFYFA------SMMGNLVIVFTVTMDAHLHSPMYFLLANL-SIIDMAFCSITAPKMICDIFKKHKAISFR------------GCITQIFFSHALGGTEMVLLI------------AMAFDRYMAICKPLHYLTIMSPRMCLYFLATSSII--GLIHSLVQLVFVVDLPFCGPNIFDSFYCDLPRLLR------LACTNTQELEFMVTVNSGLISVGSFVLLVISYIFILFTVWKHSSGGLAKALSTLSAH---VTVVILFF---------GPLMFFYTWP---SPTSHLDKYLAIFDAFITPFLNPVIYTFRN----KDM--KVAMRRLCSRLAHFTKIL---------- |
| 1YNH Chain:A ((14-452)) | AWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTL-DGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTVSTYLFNS-QLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YNH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -360910 for 2318 contacts (-155.7/contact) +
2D Compatibility (PS) -32747 + (NN) 54 + (LL) 4
1D Compatibility (HY) -5200 + (ID) 2350
Total energy: -401149.0 ( -173.06 by residue)
QMean score : 0.270
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