Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGTKLEDSPPCRNWSSASELNETQEPFLNPTDYDDEEFLRYLWREYLHPKEYEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAICHPL-MFKSTAKRARNSIVIIWIVSCIIMIPQAIVMECSTVFP-GLANKTTLFTVCDERW---GGEIYPKMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQIPGTSSVVQRKWKPLQPVSQPRGPGQPTKSRMSAVAAEIKQIRARRKTARMLMIVLLVFAICYLPISILNVLKRVFGMFAHTEDRETVYAWFTFSHWLVYANSAANPIIYNFLSGKFREEFKAAFSCCCLGVHHRQEDRLTRGRTSTESRKSLTTQISNFDNISKLSEQVVLTSISTLPAANGAGPLQNW |
| 1F88 Chain:A ((1-348)) | MNGTEGPNF----YVPFSNKTGVVRSPFEAPQ-------------YYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL--VGWSRYIPEGMQ------CSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV-----------------------KEAAASATTQ-------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT------HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC---GKNPSTTVSKTETSQVAPA----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214921 for 2788 contacts (-77.1/contact) +
2D Compatibility (PS) -34129 + (NN) -9660 + (LL) 7716
1D Compatibility (HY) -33600 + (ID) 3350
Total energy: -287944.0 ( -103.28 by residue)
QMean score : 0.223
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