Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRHSKRTHCPDWDSRESWGHESYRGSHKRKRRSHSSTQENRHCKPHHQFKESDCHYLEARSLNERDYRDRRYVDEYRNDYCEGYVPRHYHRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSSHQSRSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKN----VGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELL-GLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHN-KLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATY---DDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRKRKYFHHNQLDWDEHSSAGRYVRRRCKPLKEFMLCHDEEHEKLFDLVRRMLEYDPTQRIT-----LDEALQHPFFDLLKKK |
| 4GV1 Chain:A ((8-271)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------NEFEYLKLLGKGTFGKVILVKEK-ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH--P---F-LTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV--FSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDK-------------------DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE---KLFELILM------------------EEIRFPRTL------------------G-----PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219166 for 1959 contacts (-111.9/contact) +
2D Compatibility (PS) -27150 + (NN) -8956 + (LL) 11812
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -265360.0 ( -135.46 by residue)
QMean score : 0.477
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