Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSFSSLQDKGMKNSEFLKGEVSFEQKAKILLEALSSIPNFVGETFVIKCGGITISDETLFNTFVHNVVLLKQLGINPVIVHDGEYEIDSVLKILGINSKFVNDIRLTDKDTMRIIEMVLCGSINKKIVQHINSAGGSAIGLCGKDGNLIKAEKISTTLRENGSNNVEKILDMGFIGIPTEINPDILFFIEESDFIPVIAPIGHGKNGETYHIDADGAAGAIAVAVSASKMIIFSDVCEEMDKIDG-----RKISVKNLNASINCGKIKGERFVEKLTACAKMVEECAGIAHIVNGRIPNIMIDL-FTESNSSVSIVNDL |
2RD5 Chain:A ((18-298)) | -----------------------DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVP------------NSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAG-GMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213575 for 2287 contacts (-93.4/contact) +
2D Compatibility (PS) -29790 + (NN) -10572 + (LL) 1780
1D Compatibility (HY) -23600 + (ID) 4500
Total energy: -280257.0 ( -122.54 by residue)
QMean score : 0.587
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