Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNRKDLLSVLDFTVNDVGNIIELAGQYLENKA--ANGRILENKTVINLFFEDSTRTLTSFEMAAKSLGANVVTLPV-KSSSINKGEDLTDMIKTLNAMNPDYIVVRQKSSGIVNMLAKHVSCLLINAGDGSSEHPTQALADYFVISSHKKQIKNLKIVICGDILHSRVARSNIRLLKMFGAKICLVAPPTLICK-HFPEV-------DSIYYSLIEGIKDADVIMLLRLQKERMNSGCFIPSNREYFYLYGLDSQKLLCAKSNAIVMHPGPINRGIEISSDITD---HIILQQVEFGLAIRKAVLHYYRPC |
1ML4 Chain:A ((2-307)) | DWKGRDVISIRDFSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQY-CDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPD-E--QEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRV--DEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ML4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241928 for 2523 contacts (-95.9/contact) +
2D Compatibility (PS) -31557 + (NN) -11367 + (LL) 12
1D Compatibility (HY) -15600 + (ID) 4600
Total energy: -305040.0 ( -120.90 by residue)
QMean score : 0.536
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