Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIGLIDRVIAERKDIKVENIKVEQKVG
1YG6 Chain:C ((5-193))
-----MVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN--------------
General information:
TITO was launched using:
RESULT:
Template:
1YG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105533 for 1346 contacts (-78.4/contact) +
2D Compatibility (PS) -20335 + (NN) -8556 + (LL) 1676
1D Compatibility (HY) -25200 + (ID) 6450
Total energy: -164398.0 ( -122.14 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1YG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YG6-query.scw
PDB file :
Tito_Scwrl_1YG6.pdb
: