Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNSDFSSLLLDIIELIQSHIIIV--NKNDHSLIYLNEMSESLLLYVYSVLINVTSINKLFLYEETNTVFR------CITSSINENMDCIINHSPNELLMFLYDLEQRFNNFINRLNLKEPKNRHTYPTLNSVYIE-------LNPLQLSEDTYFSSINVAELINRQSIRKNLFK
1GPM Chain:A ((208-404))
WTPAKIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVD-NGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAAKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFP
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35044 for 1096 contacts (-32.0/contact) +
2D Compatibility (PS) -16798 + (NN) -3646 + (LL) 192
1D Compatibility (HY) -800 + (ID) 850
Total energy: -56946.0 ( -51.96 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: