Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELC-ARFDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNHLFANH-PSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTIYSNAYQSDLKMSITKAPRFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISELTLTRIRQSDY
3BWG Chain:A ((8-236))
--------QQIATEIETYIEEHQLQQGDKLPVLETL-MAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKGYISLLSNQGDF-------NVTSKVIELDVRKPTPEAAENLNIGMDEDIYYVKRVRYING----QTLCYEESYYTKSIVTYLN-NEIVSHSIFHYIREGLGLKIGFSDLFLHVGQLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANS----
General information:
TITO was launched using:
RESULT:
Template:
3BWG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103040 for 1559 contacts (-66.1/contact) +
2D Compatibility (PS) -23913 + (NN) -8847 + (LL) 1884
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -144016.0 ( -92.38 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_3BWG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BWG-query.scw
PDB file :
Tito_Scwrl_3BWG.pdb
: