Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYD-----VIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3V9P Chain:A ((27-216))
---FITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN-QPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASAR-RGAVRMP---ESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQI---------------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58593 for 1288 contacts (-45.5/contact) +
2D Compatibility (PS) -19605 + (NN) -11073 + (LL) 1828
1D Compatibility (HY) -12000 + (ID) 3350
Total energy: -102793.0 ( -79.81 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: