Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGN--------RDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
2DZB Chain:A ((26-272))
LDRVRLLGVLNLTP-------------RALERAREMVAEGADILDLGAES----------EEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLLNDV-TGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVE-DPAQRVHGSVAAHLFAVMKGVRLLRVHDV------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134923 for 1821 contacts (-74.1/contact) +
2D Compatibility (PS) -23558 + (NN) -15789 + (LL) 2152
1D Compatibility (HY) -17200 + (ID) 4700
Total energy: -194018.0 ( -106.54 by residue)
QMean score : 0.729
(partial model without unconserved sides chains):
PDB file :
Tito_2DZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZB-query.scw
PDB file :
Tito_Scwrl_2DZB.pdb
: