Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAALTEEELI-EKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
1JPN Chain:B ((122-177))
--------------------------------------YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR--------------------
General information:
TITO was launched using:
RESULT:
Template:
1JPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 19207 for 303 contacts (63.4/contact) +
2D Compatibility (PS) -6330 + (NN) -6274 + (LL) 4984
1D Compatibility (HY) -800 + (ID) 950
Total energy: 9837.0 ( 32.47 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_1JPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JPN-query.scw
PDB file :
Tito_Scwrl_1JPN.pdb
: