Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4YIJ Chain:B ((1-136))
-------------------------------------------------------------------------------ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLEKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSE-------
General information:
TITO was launched using:
RESULT:
Template:
4YIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40816 for 1070 contacts (-38.1/contact) +
2D Compatibility (PS) -14504 + (NN) -2482 + (LL) 5568
1D Compatibility (HY) -16000 + (ID) 6500
Total energy: -74734.0 ( -69.84 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4YIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YIJ-query.scw
PDB file :
Tito_Scwrl_4YIJ.pdb
: