Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
3LP6 Chain:A ((8-165))
PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGA--GNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQ
General information:
TITO was launched using:
RESULT:
Template:
3LP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132639 for 1299 contacts (-102.1/contact) +
2D Compatibility (PS) -16689 + (NN) -3291 + (LL) -28
1D Compatibility (HY) -14400 + (ID) 4400
Total energy: -171447.0 ( -131.98 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_3LP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LP6-query.scw
PDB file :
Tito_Scwrl_3LP6.pdb
: