Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
3M6R Chain:A ((42-147))
----------------------------------------------------------IGLSAPQVGLNVQLM-VFNPAGEPGEGKEIVLVNPKIKKYS--DKLVPFDEGCLSFPGIYAEVV-RPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRM---------------
General information:
TITO was launched using:
RESULT:
Template:
3M6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47874 for 715 contacts (-67.0/contact) +
2D Compatibility (PS) -11336 + (NN) -2992 + (LL) 5944
1D Compatibility (HY) -13200 + (ID) 2150
Total energy: -71608.0 ( -100.15 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_3M6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M6R-query.scw
PDB file :
Tito_Scwrl_3M6R.pdb
: