Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
4DF7 Chain:A ((9-135))
---------------------------------------------KEPATLIKAIDGDTLKLMYKGQPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMINEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
4DF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1490 for 974 contacts (-1.5/contact) +
2D Compatibility (PS) -13196 + (NN) -3661 + (LL) 3536
1D Compatibility (HY) -9600 + (ID) 2400
Total energy: -26811.0 ( -27.53 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4DF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DF7-query.scw
PDB file :
Tito_Scwrl_4DF7.pdb
: