Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPTVNDLPERDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLIEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTILENKK---PNHHYISESGIHDASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS
1VC4 Chain:A ((10-253))
-GVLGEIARKRASEVAPY----PLPE-----PPSVPSFKEALL-RPGLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV------
General information:
TITO was launched using:
RESULT:
Template:
1VC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149461 for 2113 contacts (-70.7/contact) +
2D Compatibility (PS) -25302 + (NN) -5499 + (LL) 1624
1D Compatibility (HY) -15600 + (ID) 4050
Total energy: -198288.0 ( -93.84 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1VC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VC4-query.scw
PDB file :
Tito_Scwrl_1VC4.pdb
: