Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKTLPEDFIFGGATAAYQAEGATNTDGKGRVAWDTYLEE----NYWYTAEPASDFYNRYPVDLELSEKFGVNGIRISIAWSRIFPNGYGEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDFEKVFQSHHNMMVAHARAVKLFKDGGYQGEIGVVHALPTKYPFDPSN--PEDVRAAELEDIIHN-KFILDATYLGKYSRETMEGVQHILSVNGGKLNITDEDYAILDAAKDLNDFLGINYYMSDWMR-GYDGESEITHNATGDKGGSKYQLKGVGQREFDVDVPRTDWDWMIYPQGLYDQIMRVVKDYPNYHKIYITENGLGYKDEFIESEKTVHDDARIDYVRQHLNVIADAIKDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKELAETKEIK |
| 2J79 Chain:B ((25-467)) | -VKKFPEGFLWGVATASYQIEGSPLADGAGMSIWHTFSHTPGNVKNGDTGDVACDHYNRWKEDIEIIEKLGVKAYRFSISWPRILPEGTGRVNQKGLDFYNRIIDTLLEKGITPFVTIYHWDLPFALQLKGGWANREIADWFAEYSRVLFENFGDRVKNWITLNEPWVVAIVGHLYGVHAPGMR-DIYVAFRAVHNLLRAHARAVKVFRETVKDGKIGIV--FNNGY-FEPASEKEEDIRAVRFMHQFNNYPLFLNPIYRGDYPELVLEFAREYLPE-----NYKDD----MSEIQEKIDFVGLNYYSGHLVKFDPDA--KVSF--------------------VERDLPKTAMGWEIVPEGIY-WILKKVKEEYNPPEVYITENGAAF-DDVVSEDGRVHDQNRIDYLKAHIGQAWKAIQEGVPLKGYFVWSLLDNFEWAEGYSKRFGIVYVDYSTQKRIVKDSGYWYSNVVKNNGLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J79.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188659 for 3865 contacts (-48.8/contact) +
2D Compatibility (PS) -46209 + (NN) -15032 + (LL) 840
1D Compatibility (HY) -36400 + (ID) 8200
Total energy: -293660.0 ( -75.98 by residue)
QMean score : 0.625
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