Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRIGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFPDTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK
4C8G Chain:A ((24-179))
-VRIGQGYDVHQLVEGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF--------GADSRVLLRACAERVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTNEKLGYLGRGEGIEAQAAALLVK
General information:
TITO was launched using:
RESULT:
Template:
4C8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112938 for 1257 contacts (-89.8/contact) +
2D Compatibility (PS) -16406 + (NN) -9400 + (LL) 564
1D Compatibility (HY) -12800 + (ID) 4350
Total energy: -155330.0 ( -123.57 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4C8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C8G-query.scw
PDB file :
Tito_Scwrl_4C8G.pdb
: