Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSDGSNYKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLISKKVYSY-ETESDKENVETMLKFLKSKDNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQSGKLIFKKVDTKEKVLIKETYKKN |
2RK5 Chain:A ((3-88)) | ------------------------------------------------------------------------------------QSREIADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIP----SQEEKEHFEVESNGKHLELINDKVKDGRVTKLKILVS----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RK5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 12502 for 607 contacts (20.6/contact) +
2D Compatibility (PS) -8674 + (NN) 899 + (LL) 6000
1D Compatibility (HY) -400 + (ID) 750
Total energy: 9577.0 ( 15.78 by residue)
QMean score : 0.297
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