Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQIKELAELTGVSVRTLHHYDKIGLLVP-QKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
1JBG Chain:A ((2-107))
KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTD-AGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS---------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44756 for 602 contacts (-74.3/contact) +
2D Compatibility (PS) -11785 + (NN) -10523 + (LL) 9628
1D Compatibility (HY) -12400 + (ID) 2700
Total energy: -72536.0 ( -120.49 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_1JBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JBG-query.scw
PDB file :
Tito_Scwrl_1JBG.pdb
: