Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYEKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEM-TDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNN-MEYGLNPSEIPPFFDEYARLVKWIFKK |
4YF1 Chain:A ((28-186)) | --------------------TGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTE-MTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYAL--SSKSVWSYFKRGYDLQKWYNQGIKNNMEY-GLNPSEIPPFFDEYARLVKWIFK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YF1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 32905 for 1114 contacts (29.5/contact) +
2D Compatibility (PS) -16159 + (NN) -4118 + (LL) 2600
1D Compatibility (HY) 3200 + (ID) 2100
Total energy: 16328.0 ( 14.66 by residue)
QMean score : 0.280
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