Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQKTFIKVTCSILTISDTRNLDTDTSGQLIQSALETAGHEVISRVVVPDDVTLIKQKINELAA-NGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEIFRMLSYEEVGSRAMVSRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAERQK
1MKZ Chain:A ((6-162))
---TEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVA-NKTLILAMPGSTKACRTAWENIIAPQLDARTRPC--
General information:
TITO was launched using:
RESULT:
Template:
1MKZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126258 for 1266 contacts (-99.7/contact) +
2D Compatibility (PS) -16519 + (NN) -4675 + (LL) 720
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -160282.0 ( -126.61 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1MKZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKZ-query.scw
PDB file :
Tito_Scwrl_1MKZ.pdb
: