Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQT-KKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQI-PPSLQNIYLELHNDLNCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
4WRV Chain:A ((41-238))
-------------------------QFLRAEIAAGRRYLPAGSNVLRAFTFP-FDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP--
General information:
TITO was launched using:
RESULT:
Template:
4WRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96483 for 1553 contacts (-62.1/contact) +
2D Compatibility (PS) -20974 + (NN) -7430 + (LL) 1988
1D Compatibility (HY) -16800 + (ID) 4500
Total energy: -144199.0 ( -92.85 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4WRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WRV-query.scw
PDB file :
Tito_Scwrl_4WRV.pdb
: