Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYEYFPGFYDRLMDS--ELYDEWLEFSADFIGD----APKKVLDLACGTAEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEIS-TIWN-SFPGEHPHSIEH-ELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHEKPNKTSERIFFAARK
1WZN Chain:A ((4-249))
-LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDFPC--------GPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRP-NGEVKAFLVDDELNIYTPREVRLLA-EKYFEKVKIYGNLKRELSPN-DMRYWIVGIA
General information:
TITO was launched using:
RESULT:
Template:
1WZN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128232 for 1774 contacts (-72.3/contact) +
2D Compatibility (PS) -25252 + (NN) -13277 + (LL) 1308
1D Compatibility (HY) -21200 + (ID) 2650
Total energy: -189303.0 ( -106.71 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1WZN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WZN-query.scw
PDB file :
Tito_Scwrl_1WZN.pdb
: